Courses
CHBI 530
Reconstruction of metabolic network from genome information and its structural and functional analysis, computational models of biochemical reaction networks; system biology in drug discovery and proteomics, flux balance analysis; modeling of gene expression; system biology in artificial intelligence. These concepts will be supported with statistic, thermodynamic, structural biology and learning machine
CHBI 585
Principles of molecular modeling in chemical engineering applications; fundamentals for molecular simulation of adsorption and diffusion processes in nanoporous materials; molecular dynamics methods for gas transport in nanopores; Monte Carlo methods for equilibrium based gas separations; molecular modeling of zeolites and metal organic frameworks for gas storage.
CMSE 520
Relationship between structure, function and dynamics in biomolecules. Overview of the biomolecular databases and application of computational methods to understand molecular interactions; networks. Principles of computational modeling and molecular dynamics of biological systems.
INDR 501
Convex analysis, optimality conditions, linear programming model formulation, simplex method, duality, dual simplex method, sensitivity analysis; assignment, transportation, and transshipment problems.
MASE 538
Intermolecular forces which govern self-organization of biological and synthetic nanostructures. Thermodynamic aspects of strong (covalent and coulomb interactions) and weak forces (dipolar, hydrogen bonding). Self-assembling systems: micelles, bilayers, and biological membranes. Computer simulations for ôhands-onö experience with nanostructures.
CHBI 584
The fundamentals of tissue engineering at the molecular and cellular level; techniques in tissue engineering; problems and solution in tissue engineering; transplantation of tissues in biomedicine using sophisticated equipments and materials; investigation of methods for the preparation of component of cell, effect of growth factors on tissues.
CHBI 595
Independent research towards M.S. degree with thesis option.
ENGR 500
Optimization problems for dynamical systems. Pontryagin?s Maximum Principle. Optimality conditions for nonlinear dynamical systems. Linear Quadratic Optimal Control of continuous and discrete linear systems using finite and infinite time horizons. Stability and performance analysis of the properties of the optimal feedback solutions. Moving horizon optimal control of constrained systems using Model Predictive Control formulation. Applications from different disciplines and case studies.
MASE 504
Thermal and mechanical properties of metals, polymers, ceramics and composites in relation to their structure & morphology; change in microstructural mechanisms and macroscopic behaviour with temperature; crystallization, melting & glass transition, stress-strain behaviour; elastic deformation, yielding, plastic flow; viscoelasticity; strengthening mechanisms, fracture, fatigue, creep
MASE 542
Materials for biomedical applications; synthetic polymers, metals and composite materials as biomaterials; biopolymers, dendrimers, hydrogels, polyelectrolytes, drug delivery systems, implants, tissue grafts, dental materials, ophthalmic materials, surgical materials, imaging materials.
CHBI 531
Modeling concepts and tools for chemical and biological systems. Steady state and transient modeling and simulation. MATLAB based case studies. Selected topics from the curriculum such as reaction stoichiometry, kinetics modeling, reactors, equation of state, phase equilibria, staged operations, fluxes, diffusion and convection, parameter estimation.
CHBI 590
ENGL 500
The following objectives will be met through extensive reading, writing and discussion both in and out of class.Build a solid background in academic discourse, both written and spoken. Improve intensive and extensive critical reading skills. Foster critical and creative thinking. Build fundamental academic writing skills including summary, paraphrase, analysis, synthesis. Master cohesiveness as well as proper academic citation when incorporating the work of others.
MASE 501
Crystal structure, reciprocal lattice, determination of crystal structure by x-ray diffraction, energy levels of a periodic potential, Bloch theorem, band theory of solids, crystal defects, lattice vibrations and phonons; electrical conductivity, metals, dielectrics, and semiconductors; magnetic effects, paramagnets, diamagnets, ferromagnets, and superconductors; optical properties of materials, refractive index, dispersion, absorption and emission of light, nonlinear optical materials, high harmonic generation, Raman effect.
MASE 540
Interaction forces in interfacial systems; fluid interfaces; colloids; amphiphilic systems; interfaces in polymeric systems & polymer composites; liquid coating processes.
